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Sample GSM3687 Query DataSets for GSM3687
Status Public on Jun 15, 2003
Title Skin graft draining nodes (CBA)
Sample type SAGE
Anchor NlaIII
Tag Count 5411
Tag Length 10
 
Source name Normal CBA/Ca Lymph nodes draining B10.BR skin graft
Organism Mus musculus
Extracted molecule total RNA
 
Description Draining lymph nodes were pooled from normal CBA/Ca mice grafted with B10.BR (multiple minor antigen mismatched) skin on day 7 after grafting. mRNA was made from total lymph nodes.
 
Submission date Jan 16, 2003
Last update date Nov 19, 2008
Contact name Steve Cobbold
E-mail(s) stephen.cobbold@path.ox.ac.uk
Phone +44-(0)1865-275504
Fax +44-(0)1865-275501
URL http://www.molbiol.ox.ac.uk/pathology/tig/welcome.html
Organization name University of Oxford
Department Sir William Dunn School of Pathology
Lab Therapeutic Immunology Group
Street address South Parks Road
City Oxford
State/province Oxfordshire
ZIP/Postal code OX1 3RE
Country United Kingdom
 
Platform ID GPL11
Series (1)
GSE1316 IL-10-conditioned dendritic cells elicit innate inflammatory gene products in response to danger signals

Data table header descriptions
TAG 10 base pair SAGE Tag
COUNT Absolute count of each Tag in library
TPM tags per million

Data table
TAG COUNT TPM
CTAGGTGGTG 39 7207.54
CCCTGGGTTC 29 5359.45
ATCTGTGTTG 28 5174.64
GTGGCTCACA 28 5174.64
AAGATCAAGA 26 4805.03
CATCGCCAGT 26 4805.03
GTGACCACGG 25 4620.22
CTAATATTTG 23 4250.60
GTTCAAGTGA 23 4250.60
GCCAAGTGGA 20 3696.17
GATTGAGAAT 15 2772.13
AAGGTGGAAG 14 2587.32
CAAGGTGACA 14 2587.32
GGGGAAATCG 14 2587.32
TTAGGAGGCT 14 2587.32
AACTGAGGGG 13 2402.51
GATACTTGGA 13 2402.51
AGGCAGACAG 12 2217.70
ATCCGAAAGA 12 2217.70
ATGACTGATA 12 2217.70

Total number of rows: 4048

Table truncated, full table size 79 Kbytes.




Supplementary data files not provided

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