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Sample GSM370908 Query DataSets for GSM370908
Status Public on Feb 13, 2009
Title mstm_wt_3 rep2
Sample type RNA
 
Source name Gastric mucosa from wild type mice
Organism Mus musculus
Characteristics C57Bl/6NCr
wild type
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using a Perfect RNA Tissue kit (5 Prime Inc., Gaithersburg, MD) following manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description none
Data processing Data were normalized using Mean/median scaling normalization and Welch t test with Array Track v3.3
 
Submission date Feb 12, 2009
Last update date Feb 12, 2009
Contact name Han Zhang
E-mail(s) hzhang@mcg.edu
Organization name Medical College of Georgia
Department IMMAG
Lab CB2701
Street address 1120 15th st
City Augusta
State/province GA
ZIP/Postal code 30909
Country USA
 
Platform ID GPL6887
Series (1)
GSE14813 Lasp1 gene deletion: Effect on gene expression in the gastric mucosa

Data table header descriptions
ID_REF
VALUE Normalized signal intensity
Raw Non-normalized average detection signal

Data table
ID_REF VALUE Raw
ILMN_1212602 859.8290405 100.6
ILMN_1212603 872.6495361 102.1
ILMN_1212605 4676.92334 547.2
ILMN_1212607 923.9316406 108.1
ILMN_1212612 1347.008545 157.6
ILMN_1212614 700 81.9
ILMN_1212619 1189.74353 139.2
ILMN_1212623 850.4273682 99.5
ILMN_1212625 11817.94824 1382.7
ILMN_1212626 15135.89746 1770.9
ILMN_1212628 819.6581421 95.9
ILMN_1212632 1622.22229 189.8
ILMN_1212633 2034.187988 238
ILMN_1212636 25645.29883 3000.5
ILMN_1212637 15316.23926 1792
ILMN_1212638 138274.3594 16178.1
ILMN_1212639 4360.684082 510.2
ILMN_1212644 919.6580811 107.6
ILMN_1212645 879.4871826 102.9
ILMN_1212646 9165.8125 1072.4

Total number of rows: 45281

Table truncated, full table size 1349 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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