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Sample GSM37339 Query DataSets for GSM37339
Status Public on Feb 03, 2005
Title PBEC_IL1beta/TNFalpha
Sample type SAGE
Anchor NlaIII
Tag Count 28379
Tag Length 10
 
Source name primary bronchial epithelial cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description SAGE library derived from primary human bronchial epithelial cells stimulated with the pro-inflammatory cytokines IL1beta and TNFalpha; the RNA used for these libraries was extracted from bronchial epithelial cells derived from 7 donors 6 hours after stimulation. Library was constructed at the department of Medical Pharmacology, LACDR, Leiden University Medical Center.
Keywords = epithelial cells
Keywords = bacterial infection
Keywords = inflammation
 
Submission date Dec 08, 2004
Last update date Nov 19, 2008
Contact name Joost Vos
E-mail(s) info@joostvos.nl
Phone +31 20 4449998
Fax +31 20 4448081
URL http://www.joostvos.nl
Organization name Vrije Universiteit Medisch Centrum
Department Molecular Cell Biology and Immunology
Street address Van der Boechorststraat 7
City Amsterdam
ZIP/Postal code 1081 BT
Country Netherlands
 
Platform ID GPL4
Series (1)
GSE2056 PBECs stimulated with pro-inflammatory cytokines and P. aeruginosa

Data table header descriptions
TAG SAGE tag sequence
COUNT SAGE tag count
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 52 1832.34
AAAAAAAAAG 1 35.24
AAAAAAAAGA 3 105.71
AAAAAAATTC 1 35.24
AAAAAAATTT 2 70.47
AAAAAACCCA 5 176.19
AAAAAACCCC 1 35.24
AAAAAAGCAA 1 35.24
AAAAAAGGCG 1 35.24
AAAAAATTTG 1 35.24
AAAAACAAAG 1 35.24
AAAAACATTC 2 70.47
AAAAACCCTT 1 35.24
AAAAACGCCA 1 35.24
AAAAACTGCT 1 35.24
AAAAACTTTA 1 35.24
AAAAAGAAAC 2 70.47
AAAAAGAAAG 1 35.24
AAAAAGCAGA 1 35.24
AAAAAGGATT 1 35.24

Total number of rows: 12475

Table truncated, full table size 233 Kbytes.




Supplementary data files not provided

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