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Sample GSM37479

Query DataSets for GSM37479

Status

Public on Mar 02, 2005

Title

MIN6 cell, GFP control 1

Sample type

RNA

Source name

Mouse pancreatic beta cell line MIN6

Organism

Mus musculus

Extracted molecule

total RNA

Description

Culture of mouse MIN6 cells, infected with GFP control adenovirus, no treatment (as compared to forskolin treated samples). RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. 2 control and 2 forskolin treated samples from GFP virus infected cells, and 2 forskolin treated samples from ACREB virus infected cells were analyzed. Data was analyzed using dChIP software (www.dchip.org).
Keywords = MIN6, cAMP induced genes, forskolin, CREB target genes

Submission date

Dec 10, 2004

Last update date

May 27, 2005

Contact name

Xinmin Zhang

E-mail(s)

xzhang@salk.edu

Phone

858-453-4100 x1157

Organization name

Salk Institute

Street address

10010 N. Torrey Pines Rd.

City

La Jolla

State/province

ZIP/Postal code

92037

Country

USA

Platform ID

GPL81

Series (1)

GSE2060

Characterize CREB target genes in different tissue types

Data table header descriptions
ID_REF
VALUE	'expression index' a measure of the abundance of a transcript, determined using the dChip software with PM-MM models.

Data table
ID_REF	VALUE
AFFX-MurIL2_at	265.41
AFFX-MurIL10_at	111.211
AFFX-MurIL4_at	36.0815
AFFX-MurFAS_at	816.226
AFFX-BioB-5_at	184.714
AFFX-BioB-M_at	168.754
AFFX-BioB-3_at	324.473
AFFX-BioC-5_at	656.576
AFFX-BioC-3_at	596.667
AFFX-BioDn-5_at	439.626
AFFX-BioDn-3_at	1923.48
AFFX-CreX-5_at	4902.71
AFFX-CreX-3_at	7300.83
AFFX-BioB-5_st	355.834
AFFX-BioB-M_st	203.886
AFFX-BioB-3_st	232.668
AFFX-BioC-5_st	785.177
AFFX-BioC-3_st	228.468
AFFX-BioDn-5_st	901.897
AFFX-BioDn-3_st	560.516

Total number of rows: 12488

Table truncated, full table size 218 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM37479.CEL.gz	2.9 Mb	(ftp)(http)	CEL
GSM37479.EXP.gz	260 b	(ftp)(http)	EXP