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Sample GSM37480

Query DataSets for GSM37480

Status

Public on Mar 02, 2005

Title

MIN6 cell, GFP control 2

Sample type

RNA

Source name

Mouse pancreatic beta cell line MIN6

Organism

Mus musculus

Extracted molecule

total RNA

Description

Culture of mouse MIN6 cells, infected with GFP control adenovirus, no treatment (as compared to forskolin treated samples). RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. 2 control and 2 forskolin treated samples from GFP virus infected cells, and 2 forskolin treated samples from ACREB virus infected cells were analyzed. Data was analyzed using dChIP software (www.dchip.org).
Keywords = MIN6, cAMP induced genes, forskolin, CREB target genes

Submission date

Dec 10, 2004

Last update date

May 27, 2005

Contact name

Xinmin Zhang

E-mail(s)

xzhang@salk.edu

Phone

858-453-4100 x1157

Organization name

Salk Institute

Street address

10010 N. Torrey Pines Rd.

City

La Jolla

State/province

ZIP/Postal code

92037

Country

USA

Platform ID

GPL81

Series (1)

GSE2060

Characterize CREB target genes in different tissue types

Data table header descriptions
ID_REF
VALUE	'expression index' a measure of the abundance of a transcript, determined using the dChip software with PM-MM models.

Data table
ID_REF	VALUE
AFFX-MurIL2_at	222.122
AFFX-MurIL10_at	100.135
AFFX-MurIL4_at	27.4743
AFFX-MurFAS_at	731.653
AFFX-BioB-5_at	300.213
AFFX-BioB-M_at	270.741
AFFX-BioB-3_at	514.648
AFFX-BioC-5_at	1037.51
AFFX-BioC-3_at	737.244
AFFX-BioDn-5_at	718.907
AFFX-BioDn-3_at	2479.19
AFFX-CreX-5_at	6644.3
AFFX-CreX-3_at	9035.96
AFFX-BioB-5_st	359.66
AFFX-BioB-M_st	180.347
AFFX-BioB-3_st	230.157
AFFX-BioC-5_st	993.462
AFFX-BioC-3_st	248.118
AFFX-BioDn-5_st	889.12
AFFX-BioDn-3_st	637.166

Total number of rows: 12488

Table truncated, full table size 218 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM37480.CEL.gz	2.8 Mb	(ftp)(http)	CEL
GSM37480.EXP.gz	260 b	(ftp)(http)	EXP