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Sample GSM37602 Query DataSets for GSM37602
Status Public on Jan 31, 2005
Title HeLa transfected with chimiR-1-124 versus control transfected HeLa, 12 hours
Sample type RNA
 
Channel 1
Source name HeLa transfected with chimiR-1-124 duplex, 12 hours
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Mock transfected HeLa, 12 hours
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description 100nM Oligofectamine transfection of duplexes as described in Lim et al., submitted to Nature, 2004
Sample author: Jason,M,Johnson
Keywords = microRNA
 
Submission date Dec 15, 2004
Last update date Feb 01, 2007
Contact name Lee Lim
E-mail(s) lee_lim@merck.com
Phone 206-802-7323
Organization name Rosetta Inpharmatics
Street address
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platform ID GPL1749
Series (1)
GSE2075 Rosetta_miRNA_transfection_experiment

Data table header descriptions
ID_REF Rosetta generated unique probe identifier
VALUE same as UNF_VALUE but with flagged values removed
ERROR Error estimate for LOG10 RATIO (VALUE)
LOG_INTENSITY Averaged log10 intensity of a fluor-reversed chip pair [.5 * log10(CHANNEL1*CHANNEL2), error weighted]
P_VALUE P value that the probe target is differentially expressed in the two tissues
FAILED_QC TRUE for probes which failed a quality-control measure
UNF_VALUE LOG10 RATIO: Averaged log10 ratio of a fluor-reversed chip pair [log10(CHANNEL1/CHANNEL2), error weighted]

Data table
ID_REF VALUE ERROR LOG_INTENSITY P_VALUE FAILED_QC UNF_VALUE
1010423 0.02826 0.05843 -0.78759 0.62864 FALSE 0.02826
1010498 0.01626 0.04594 0.76999 0.72339 FALSE 0.01626
1010600 -0.07828 1.334 -2.29335 0.95321 FALSE -0.07828
1010604 0.04683 0.05182 -0.24815 0.36617 FALSE 0.04683
1010607 -0.01307 0.04957 -0.32864 0.79209 FALSE -0.01307
1010614 0.16295 0.08408 -1.06966 0.0526 FALSE 0.16295
1010673 0.05873 0.05745 0.88781 0.30667 FALSE 0.05873
1010712 -0.03199 0.05595 -0.3817 0.56745 FALSE -0.03199
1010719 0.09185 0.4992 -1.84076 0.85402 FALSE 0.09185
1010720 -0.01991 0.04841 -0.23001 0.68089 FALSE -0.01991
1010724 0.08624 0.08758 -0.5754 0.3248 FALSE 0.08624
1010731 0.05014 0.04917 1.03595 0.30791 FALSE 0.05014
1010732 0.04012 0.05805 0.79269 0.4895 FALSE 0.04012
1011137 0.00116 0.15525 -1.68557 0.99405 FALSE 0.00116
1011161 0.08367 0.07327 0.49885 0.25349 FALSE 0.08367
1011321 -0.02368 0.11706 -1.40714 0.83966 FALSE -0.02368
1011371 0.12801 0.07791 -0.21974 0.10038 FALSE 0.12801
1011383 0.01742 0.28702 -1.96677 0.95161 FALSE 0.01742
1011453 0.07639 0.09766 -1.32406 0.43412 FALSE 0.07639
1011465 0.04009 0.38732 -2.0224 0.91755 FALSE 0.04009

Total number of rows: 23564

Table truncated, full table size 1355 Kbytes.




Supplementary data files not provided

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