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Sample GSM378407 Query DataSets for GSM378407
Status Public on Mar 10, 2009
Title PLN_10d_4
Sample type RNA
 
Channel 1
Source name NOD
Organism Mus musculus
Characteristics tissue type: pancreatic lymph nodes
age: 10 days
disease state: diabetic
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy
Label cy3
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit
 
Channel 2
Source name NOD.B10
Organism Mus musculus
Characteristics disease state: control
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy
Label cy5
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit
 
 
Hybridization protocol as described in In situ Hybridization kit-plus
Scan protocol Agilent scanner, manufacturer's protocol
Description PLN_10d_4; VALUE=LOG10(NOD/NOD.B10)
Data processing Agilent Feature Extraction software 8.5
 
Submission date Mar 06, 2009
Last update date Mar 09, 2009
Contact name Keiichi Kodama
E-mail(s) kkodama@stanford.edu
Organization name Stanford Univeristy School of Medicine
Department Department of Medicine, Division of Immunology & Rheumatology
Lab Fathman
Street address 269 Campus Drive, Room 2225
City Stanford
State/province CA
ZIP/Postal code 94305-5166
Country USA
 
Platform ID GPL2872
Series (1)
GSE15150 PLN tissue- and age-specific changes in gene expression during disease induction and progression in NOD mice.

Data table header descriptions
ID_REF
VALUE Log 10 (test/control)

Data table
ID_REF VALUE
1 1.285571668
2 -0.072780417
3 -0.057599745
4 0.023769168
5 0.019912431
6 0.048584258
7 1.553452914
8 -0.199656058
9 0.033909743
10 -0.032975698
11 -0.031709929
12 -0.078633691
13 -0.192441551
14 1.614239052
15 -0.665603098
16 0.27081664
17 -0.044131256
18 -0.061075389
19 0.025835567
20 -0.115952985

Total number of rows: 43790

Table truncated, full table size 751 Kbytes.




Supplementary file Size Download File type/resource
GSM378407.txt.gz 11.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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