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Sample GSM378517 Query DataSets for GSM378517
Status Public on Mar 10, 2009
Title PLN_4w_1
Sample type RNA
 
Channel 1
Source name NOD
Organism Mus musculus
Characteristics tissue type: pancreatic lymph nodes
age: 4 weeks
disease state: diabetic
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy
Label cy3
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit
 
Channel 2
Source name NOD.B10
Organism Mus musculus
Characteristics disease state: control
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy
Label cy5
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit
 
 
Hybridization protocol as described in In situ Hybridization kit-plus
Scan protocol Agilent scanner, manufacturer's protocol
Description PLN_4w_1; VALUE=LOG10(NOD/NOD.B10)
Data processing Agilent Feature Extraction software 8.5
 
Submission date Mar 06, 2009
Last update date Mar 09, 2009
Contact name Keiichi Kodama
E-mail(s) kkodama@stanford.edu
Organization name Stanford Univeristy School of Medicine
Department Department of Medicine, Division of Immunology & Rheumatology
Lab Fathman
Street address 269 Campus Drive, Room 2225
City Stanford
State/province CA
ZIP/Postal code 94305-5166
Country USA
 
Platform ID GPL2872
Series (1)
GSE15150 PLN tissue- and age-specific changes in gene expression during disease induction and progression in NOD mice.

Data table header descriptions
ID_REF
VALUE Log 10 (test/control)

Data table
ID_REF VALUE
1 0.176750227
2 -0.006697606
3 -0.231513639
4 0.002917363
5 0.080926337
6 0.072203695
7 0
8 -0.030041922
9 -0.254920665
10 0.144453351
11 -2.229387427
12 0.109822674
13 0.020109223
14 0
15 0
16 0.181651827
17 -0.123397727
18 0
19 0.065768569
20 0.407607069

Total number of rows: 43790

Table truncated, full table size 697 Kbytes.




Supplementary file Size Download File type/resource
GSM378517.txt.gz 12.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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