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Sample GSM378537 Query DataSets for GSM378537
Status Public on Mar 10, 2009
Title PLN_16w_4
Sample type RNA
 
Channel 1
Source name NOD
Organism Mus musculus
Characteristics tissue type: pancreatic lymph nodes
age: 16 weeks
disease state: diabetic
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy
Label cy3
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit
 
Channel 2
Source name NOD.B10
Organism Mus musculus
Characteristics disease state: control
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy
Label cy5
Label protocol Agilent Low RNA Input Fluorescent Linear Amplification Kit
 
 
Hybridization protocol as described in In situ Hybridization kit-plus
Scan protocol Agilent scanner, manufacturer's protocol
Description PLN_16w_4; VALUE=LOG10(NOD/NOD.B10)
Data processing Agilent Feature Extraction software 8.5
 
Submission date Mar 07, 2009
Last update date Mar 09, 2009
Contact name Keiichi Kodama
E-mail(s) kkodama@stanford.edu
Organization name Stanford Univeristy School of Medicine
Department Department of Medicine, Division of Immunology & Rheumatology
Lab Fathman
Street address 269 Campus Drive, Room 2225
City Stanford
State/province CA
ZIP/Postal code 94305-5166
Country USA
 
Platform ID GPL2872
Series (1)
GSE15150 PLN tissue- and age-specific changes in gene expression during disease induction and progression in NOD mice.

Data table header descriptions
ID_REF
VALUE Log 10 (test/control)

Data table
ID_REF VALUE
1 0.188900376
2 0.064618845
3 -0.038701119
4 0.094135887
5 -0.059380085
6 0
7 0
8 -0.100955904
9 -0.256391521
10 -0.341911712
11 0.017758976
12 0.027724741
13 0
14 0
15 0
16 -0.065891293
17 -0.029795905
18 0
19 0.208416341
20 -0.097425614

Total number of rows: 43790

Table truncated, full table size 673 Kbytes.




Supplementary file Size Download File type/resource
GSM378537.txt.gz 12.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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