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Sample GSM379703 Query DataSets for GSM379703
Status Public on Jun 01, 2009
Title HSF1.ESC
Sample type RNA
 
Source name HSF1, ESC
Organism Homo sapiens
Characteristics cell line: HSF1
stage: ESC
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent and alcohol precipitated. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description ESC stage from HSF1 cultures.
Data processing The data were normalised using quantile normalisation with BeadStudio.
 
Submission date Mar 12, 2009
Last update date Mar 12, 2009
Contact name Ronald P. Hart
E-mail(s) rhart@rutgers.edu
Phone 848-445-1783
Organization name Rutgers University
Department Cell Biology & Neuroscience
Street address 604 Allison Rd Rm B430
City Piscataway
State/province NJ
ZIP/Postal code 08854
Country USA
 
Platform ID GPL6884
Series (1)
GSE15206 Identification of differentiation status of human embryonic stem cell cultures.

Data table header descriptions
ID_REF
VALUE quantile-normalized signal value
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 120.8278 40 5.809742 0.5512996
ILMN_2055271 165.1365 40 6.892853 0
ILMN_1736007 136.371 35 6.024292 0.0998632
ILMN_2383229 129.7916 31 9.253458 0.2284542
ILMN_1806310 127.1602 35 6.985112 0.3036936
ILMN_1779670 127.7609 38 6.456347 0.2968536
ILMN_2321282 129.8713 50 5.34092 0.2270862
ILMN_1671474 140.7167 41 6.623868 0.06019152
ILMN_1772582 118.5367 30 8.073134 0.6429549
ILMN_1735698 130.851 47 6.637851 0.2051984
ILMN_1653355 209.1748 32 9.173079 0
ILMN_1717783 114.5781 16 8.272956 0.7688099
ILMN_1705025 144.787 46 7.132218 0.03693571
ILMN_1814316 135.3995 41 7.451619 0.1149111
ILMN_2359168 108.7187 33 4.419726 0.9124487
ILMN_1731507 112.9892 44 5.507644 0.8180575
ILMN_1787689 112.4384 24 5.240346 0.8303694
ILMN_1745607 116.7269 54 4.512051 0.7072504
ILMN_2136495 152.3253 47 6.782634 0.006839945
ILMN_1668111 111.277 52 4.831213 0.8659371

Total number of rows: 48803

Table truncated, full table size 1964 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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