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Sample GSM379707 Query DataSets for GSM379707
Status Public on Jun 01, 2009
Title HSF6.NSC
Sample type RNA
 
Source name HSF6, NSC
Organism Homo sapiens
Characteristics cell line: HSF6
stage: NSC
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent and alcohol precipitated. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description NSC stage from HSF6 cultures.
Data processing The data were normalised using quantile normalisation with BeadStudio.
 
Submission date Mar 12, 2009
Last update date Mar 12, 2009
Contact name Ronald P. Hart
E-mail(s) rhart@rutgers.edu
Phone 848-445-1783
Organization name Rutgers University
Department Cell Biology & Neuroscience
Street address 604 Allison Rd Rm B430
City Piscataway
State/province NJ
ZIP/Postal code 08854
Country USA
 
Platform ID GPL6884
Series (1)
GSE15206 Identification of differentiation status of human embryonic stem cell cultures.

Data table header descriptions
ID_REF
VALUE quantile-normalized signal value
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 119.1974 43 5.465254 0.5913396
ILMN_2055271 122.7151 28 5.156592 0.4370771
ILMN_1736007 148.1959 52 6.080072 0.0135318
ILMN_2383229 118.0205 27 5.078077 0.6211096
ILMN_1806310 107.93 42 4.193209 0.9228687
ILMN_1779670 125.0728 41 5.131798 0.3680649
ILMN_2321282 119.6411 37 6.385194 0.5669824
ILMN_1671474 137.3204 46 5.056732 0.07171854
ILMN_1772582 117.8436 57 5.571095 0.6305819
ILMN_1735698 137.7837 56 4.983691 0.07171854
ILMN_1653355 155.8201 38 7.745965 0
ILMN_1717783 114.853 46 4.894764 0.7347767
ILMN_1705025 137.8292 43 4.842449 0.07036536
ILMN_1814316 138.843 29 6.625542 0.06495264
ILMN_2359168 140.4082 38 7.404766 0.05277402
ILMN_1731507 126.2907 40 5.385366 0.3274696
ILMN_1787689 112.1486 39 4.35488 0.8200271
ILMN_1745607 3606.54 29 216.371 0
ILMN_2136495 127.7898 53 4.395648 0.2841678
ILMN_1668111 102.5316 40 4.256836 0.9783491

Total number of rows: 48803

Table truncated, full table size 1961 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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