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Sample GSM379708 Query DataSets for GSM379708
Status Public on Jun 01, 2009
Title H1.NSC
Sample type RNA
 
Source name H1, NSC
Organism Homo sapiens
Characteristics cell line: H1
stage: NSC
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent and alcohol precipitated. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description NSC stage from H1 cultures.
Data processing The data were normalised using quantile normalisation with BeadStudio.
 
Submission date Mar 12, 2009
Last update date Mar 12, 2009
Contact name Ronald P. Hart
E-mail(s) rhart@rutgers.edu
Phone 848-445-1783
Organization name Rutgers University
Department Cell Biology & Neuroscience
Street address 604 Allison Rd Rm B430
City Piscataway
State/province NJ
ZIP/Postal code 08854
Country USA
 
Platform ID GPL6884
Series (1)
GSE15206 Identification of differentiation status of human embryonic stem cell cultures.

Data table header descriptions
ID_REF
VALUE quantile-normalized signal value
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 120.08 45 6.286963 0.6174496
ILMN_2055271 132.6677 39 6.939255 0.1637584
ILMN_1736007 137.7062 54 6.326558 0.07516778
ILMN_2383229 135.5861 32 7.883439 0.1100671
ILMN_1806310 107.0869 32 7.728497 0.9409396
ILMN_1779670 112.7893 35 4.576864 0.8241611
ILMN_2321282 121.3959 42 7.797665 0.5597315
ILMN_1671474 138.8362 34 6.526344 0.06174497
ILMN_1772582 115.2821 34 7.315745 0.7543624
ILMN_1735698 156.4325 56 7.333472 0
ILMN_1653355 163.2532 29 10.6753 0
ILMN_1717783 117.5567 37 6.373919 0.6818792
ILMN_1705025 131.5721 51 6.851414 0.1919463
ILMN_1814316 131.4591 43 7.229917 0.1946309
ILMN_2359168 124.1042 38 7.141949 0.4442953
ILMN_1731507 127.3471 38 6.710533 0.3154362
ILMN_1787689 118.0809 37 6.589269 0.6697987
ILMN_1745607 1617.617 38 227.3101 0
ILMN_2136495 130.5965 40 6.853096 0.2161074
ILMN_1668111 116.2932 39 6.586294 0.7221476

Total number of rows: 48803

Table truncated, full table size 1962 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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