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Sample GSM38099 Query DataSets for GSM38099
Status Public on Jan 15, 2005
Title Breast - 8248
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 19
Mammogram: Yes
Number of years in which a mammogram was obtained?: 16-20
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 11-15
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 1
Pathological ER: Positive
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 818.2 P 0.000662
AFFX-BioB-M_at 1041.2 P 0.000044
AFFX-BioB-3_at 607.8 P 0.000095
AFFX-BioC-5_at 1799.5 P 0.000052
AFFX-BioC-3_at 2136.3 P 0.000052
AFFX-BioDn-5_at 4186.5 P 0.000044
AFFX-BioDn-3_at 9666 P 0.00006
AFFX-CreX-5_at 22795.9 P 0.000052
AFFX-CreX-3_at 28764.7 P 0.000044
AFFX-DapX-5_at 579.5 P 0.000095
AFFX-DapX-M_at 1327.6 P 0.000857
AFFX-DapX-3_at 1602.2 P 0.000052
AFFX-LysX-5_at 85.6 P 0.011384
AFFX-LysX-M_at 191.6 P 0.039661
AFFX-LysX-3_at 525.6 P 0.000195
AFFX-PheX-5_at 170.1 P 0.000127
AFFX-PheX-M_at 181.8 P 0.000446
AFFX-PheX-3_at 387.9 P 0.001102
AFFX-ThrX-5_at 251.2 P 0.000169
AFFX-ThrX-M_at 314 P 0.00007

Total number of rows: 54675

Table truncated, full table size 1443 Kbytes.




Supplementary file Size Download File type/resource
GSM38099.CEL.gz 8.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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