|
| Status |
Public on Jun 07, 2013 |
| Title |
IPS_ES4CL1_P5_rep1 |
| Sample type |
RNA |
| |
|
| Source name |
Induced Pluripotent Cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: IPS_foreskin_CL1 (derived from foreskin) IPS cells GCTM-2 low CD9 low (P5)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA samples were prepared using Qiagen RNeasy Micro Kit (Qiagen) and then assayed using the Agilent Systems Bioanalyzer 2100 to ensure that high-quality RNA was used for the array experiments.
|
| Label |
Cy3
|
| Label protocol |
Targets were prepared from 200 ng total RNA using Illumina TotalPrep RNA Amplification Kit (Ambion, catalog #AMIL1791)
|
| |
|
| Hybridization protocol |
llumina Human 6 BeadChips (V3) were hybridized, washed, stained and scanned according to Illuminas protocol
|
| Scan protocol |
Processed arrays were read using Illumina BeadReader according to the manufacturer's instructions.
|
| Description |
4380071033_B
|
| Data processing |
Data were first extracted with Illumina BeadStudio software without normalisation. Data was then uploaded into R, where RMA background adjustment and Quantile normalisation was performed using the BeadExplorer package
|
| |
|
| Submission date |
Mar 18, 2009 |
| Last update date |
Jun 17, 2013 |
| Contact name |
Sean Grimmond |
| E-mail(s) |
s.grimmond@imb.uq.edu.au
|
| Organization name |
University of Queensland
|
| Department |
Institute for Molecular Bioscience
|
| Lab |
Expression Genomics Lab
|
| Street address |
Services Rd
|
| City |
St Lucia |
| State/province |
Q |
| ZIP/Postal code |
4072 |
| Country |
Australia |
| |
|
| Platform ID |
GPL6884 |
| Series (1) |
| GSE15283 |
Profiling of FACs sorted subpopulations of iPS cells from cell surface marker profile |
|
