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Sample GSM3825466 Query DataSets for GSM3825466
Status Public on Sep 14, 2021
Title CR6_RU
Sample type RNA
 
Source name ZT-0-YOUNG
Organism Mus musculus
Characteristics strain: NZB/W F1
tissue: kidney
diagnosis: young
time point: ZT-0
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio
 
Submission date May 29, 2019
Last update date Sep 14, 2021
Contact name Weijia Zhang
E-mail(s) weijia.zhang@mssm.edu
Organization name Icahn School of Medicine at Mount Sinai
Department Renal
Lab Bioinfomatics
Street address 1 Gustave L. Levy Pl
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platform ID GPL6885
Series (2)
GSE131892 Renal circadian rhythm dysregulation in lupus nephritis [array]
GSE131894 Renal circadian rhythm dysregulation in lupus nephritis

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection.Pval

Data table
ID_REF VALUE Detection.Pval
ILMN_2896528 2434.201 0
ILMN_2721178 884.8436 0
ILMN_3033922 1236.128 0
ILMN_3092673 4525.08 0
ILMN_2816356 103.8119 0.06766918
ILMN_2808939 458.1501 0
ILMN_2634564 337.3029 0
ILMN_2737647 108.7246 0.02631579
ILMN_2734484 282.3472 0
ILMN_2952292 171.3795 0
ILMN_2699078 88.34854 0.981203
ILMN_1213681 365.6947 0
ILMN_2735413 348.6824 0
ILMN_2735415 382.762 0
ILMN_2891688 641.8667 0
ILMN_2637698 588.859 0
ILMN_2674228 288.6779 0
ILMN_2601546 100.05 0.1804511
ILMN_1230831 104.4942 0.05639098
ILMN_2848071 880.8544 0

Total number of rows: 25697

Table truncated, full table size 720 Kbytes.




Supplementary file Size Download File type/resource
GSM3825466_3999026013_G_Grn.idat.gz 925.1 Kb (ftp)(http) IDAT
Processed data included within Sample table

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