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Sample GSM3825495 Query DataSets for GSM3825495
Status Public on Sep 14, 2021
Title CRS_4LL
Sample type RNA
Source name ZT-4-SICK
Organism Mus musculus
Characteristics strain: NZB/W F1
tissue: kidney
diagnosis: nephritis
time point: ZT-4
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio
Submission date May 29, 2019
Last update date Sep 14, 2021
Contact name Weijia Zhang
Organization name Icahn School of Medicine at Mount Sinai
Department Renal
Lab Bioinfomatics
Street address 1 Gustave L. Levy Pl
City New York
State/province NY
ZIP/Postal code 10029
Country USA
Platform ID GPL6885
Series (2)
GSE131892 Renal circadian rhythm dysregulation in lupus nephritis [array]
GSE131894 Renal circadian rhythm dysregulation in lupus nephritis

Data table header descriptions
VALUE quantile normalized

Data table
ID_REF VALUE Detection.Pval
ILMN_2896528 2368.435 0
ILMN_2721178 580.4134 0
ILMN_3033922 252.0445 0
ILMN_3092673 5785.797 0
ILMN_2816356 104.7814 0.06015038
ILMN_2808939 419.7149 0
ILMN_2634564 540.186 0
ILMN_2737647 103.4341 0.0802005
ILMN_2734484 114.1597 0.01378446
ILMN_2952292 156.7204 0
ILMN_2699078 97.00098 0.3909774
ILMN_1213681 683.5725 0
ILMN_2735413 265.2659 0
ILMN_2735415 277.6472 0
ILMN_2891688 372.603 0
ILMN_2637698 395.1421 0
ILMN_2674228 286.3693 0
ILMN_2601546 97.75481 0.3233083
ILMN_1230831 98.81331 0.2556391
ILMN_2848071 656.1475 0

Total number of rows: 25697

Table truncated, full table size 726 Kbytes.

Supplementary file Size Download File type/resource
GSM3825495_3999026009_C_Grn.idat.gz 923.7 Kb (ftp)(http) IDAT
Raw data provided as supplementary file
Processed data included within Sample table
Raw data are available on Series record

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