NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM3825513 Query DataSets for GSM3825513
Status Public on Sep 14, 2021
Title CRS_5RU
Sample type RNA
 
Source name ZT-20-SICK
Organism Mus musculus
Characteristics strain: NZB/W F1
tissue: kidney
diagnosis: nephritis
time point: ZT-2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with Illumina Genomestudio
 
Submission date May 29, 2019
Last update date Sep 14, 2021
Contact name Weijia Zhang
E-mail(s) weijia.zhang@mssm.edu
Organization name Icahn School of Medicine at Mount Sinai
Department Renal
Lab Bioinfomatics
Street address 1 Gustave L. Levy Pl
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platform ID GPL6885
Series (2)
GSE131892 Renal circadian rhythm dysregulation in lupus nephritis [array]
GSE131894 Renal circadian rhythm dysregulation in lupus nephritis

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection.Pval

Data table
ID_REF VALUE Detection.Pval
ILMN_2896528 2832.718 0
ILMN_2721178 732.954 0
ILMN_3033922 749.2151 0
ILMN_3092673 4360.406 0
ILMN_2816356 112.0566 0.007518797
ILMN_2808939 392.371 0
ILMN_2634564 424.4142 0
ILMN_2737647 100.4319 0.1929825
ILMN_2734484 137.516 0
ILMN_2952292 148.6223 0
ILMN_2699078 92.91745 0.764411
ILMN_1213681 400.4796 0
ILMN_2735413 300.3932 0
ILMN_2735415 343.3719 0
ILMN_2891688 424.9304 0
ILMN_2637698 382.8604 0
ILMN_2674228 280.0007 0
ILMN_2601546 98.96855 0.2669173
ILMN_1230831 104.5287 0.0651629
ILMN_2848071 665.6326 0

Total number of rows: 25697

Table truncated, full table size 724 Kbytes.




Supplementary file Size Download File type/resource
GSM3825513_3999026009_B_Grn.idat.gz 922.1 Kb (ftp)(http) IDAT
Raw data provided as supplementary file
Processed data included within Sample table
Raw data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap