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Sample GSM3827 Query DataSets for GSM3827
Status Public on Jul 05, 2003
Title Th1 clone R2.2 (CD3 activated)
Sample type SAGE
Anchor NlaIII
Tag Count 20708
Tag Length 10
 
Source name CD4+ Th1 clone R2.2: overnight activation with anti-CD3
Organism Mus musculus
Extracted molecule total RNA
 
Description A CD4+ Th1 clone (R2.2) from a primed A1xRAG-1-/- TCR transgenic mouse specific for H-Y + H2Ek. Purified CD4+ T cells were stimulated overnight with solid phase anti-CD3. cDNA was preamplified (SMART) before SAGE analysis.
 
Submission date Feb 04, 2003
Last update date Nov 19, 2008
Contact name Steve Cobbold
E-mail(s) stephen.cobbold@path.ox.ac.uk
Phone +44-(0)1865-275504
Fax +44-(0)1865-275501
URL http://www.molbiol.ox.ac.uk/pathology/tig/welcome.html
Organization name University of Oxford
Department Sir William Dunn School of Pathology
Lab Therapeutic Immunology Group
Street address South Parks Road
City Oxford
State/province Oxfordshire
ZIP/Postal code OX1 3RE
Country United Kingdom
 
Platform ID GPL11
Series (1)
GSE1316 IL-10-conditioned dendritic cells elicit innate inflammatory gene products in response to danger signals

Data table header descriptions
TAG 10 base pair SAGE Tag
COUNT Absolute count of each Tag in library
TPM tags per million

Data table
TAG COUNT TPM
GATACTTGGA 1295 62536.22
AACACTTGGA 659 31823.45
CCCTGAGTCC 542 26173.46
CCACGTGCCT 327 15791.00
AGTATTGCCA 275 13279.89
AACTGACAAA 260 12555.53
CATTTTCATA 228 11010.24
GTGGCTCACA 220 10623.91
TGGAAGAAAG 211 10189.30
TGATAAGCTA 175 8450.84
GCCACCGTCC 116 5601.70
CGCCGCCGGC 112 5408.54
GCGGCGGATG 105 5070.50
AAATAAGTGG 104 5022.21
AGAGCGAAGT 85 4104.69
GTGTTGCTCG 84 4056.40
TTCCCAGAGT 79 3814.95
AAGATCAAGA 78 3766.66
CAAGGTGACA 71 3428.63
TGGTTGCTGG 71 3428.63

Total number of rows: 8560

Table truncated, full table size 160 Kbytes.




Supplementary data files not provided

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