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Sample GSM38353 Query DataSets for GSM38353
Status Public on Oct 04, 2005
Title 08.Koth_43_N.CEL
Sample type RNA
 
Source name isolated alveolar macrophages
Organism Homo sapiens
Characteristics status: Nonsmoker
Extracted molecule total RNA
Extraction protocol RNA was extracted from mouse and human alveolar macrophages and DNase-treated using the RNeasy RNA extraction kit (Qiagen). RNA concentration and quality were assessed using the Bioanalyzer 2100 (Agilent Technologies, Palo Alto, CA).
Label protocol Labeling was performed at the UCSF core facility (cat.ucsf.edu) as per Affymetrix's standard labeling protocol for this chip type (www.affymetrix.com)
 
Hybridization protocol Samples were hybridized to Affymetrix Human Genome U133 Plus 2.0 GeneChips. RNA was ampli?ed by performing two rounds of in vitro transcription (Ambion Message Amp aRNA kit no. 1750).
Scan protocol Scanning was performed at the UCSF core facility (cat.ucsf.edu) as per Affymetrix's standard scanning protocol for this chip type (www.affymetrix.com)
Description Total RNA from freshly isolated macrophages
Data processing Bioconductor was used for quality control (affyPLM) and preprocessing (RMA).
 
Submission date Jan 04, 2005
Last update date Aug 28, 2018
Contact name Michael E. Salazar
Phone (415) 514-4371
URL http://arrays.ucsf.edu
Organization name University of California, San Francisco
Department
Lab Functional Genomics Core Laboratories
Street address 1550 Fourth Street, RM 545
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL570
Series (1)
GSE2125 isolated alveolar macrophages
Relations
Reanalyzed by GSE46903
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA normalized intensity

Data table
ID_REF VALUE
1007_s_at 7.326216
1053_at 8.228339
117_at 7.191723
121_at 11.119304
1255_g_at 4.789054
1294_at 8.816318
1316_at 7.023721
1320_at 6.54834
1405_i_at 4.313499
1431_at 4.898401
1438_at 6.336636
1487_at 8.059203
1494_f_at 6.962993
1552256_a_at 8.227589
1552257_a_at 8.637491
1552258_at 6.889853
1552261_at 6.631671
1552263_at 9.77439
1552264_a_at 8.978254
1552266_at 4.86573

Total number of rows: 54675

Table truncated, full table size 1056 Kbytes.




Supplementary file Size Download File type/resource
GSM38353.CEL.gz 8.7 Mb (ftp)(http) CEL

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