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Sample GSM3836 Query DataSets for GSM3836
Status Public on Jul 05, 2003
Title bmDC (Vitamin D3 treated)
Sample type SAGE
Anchor NlaIII
Tag Count 20452
Tag Length 10
 
Source name Mouse bone marrow derived dendritic cells (Vitamin D3 treated)
Organism Mus musculus
Extracted molecule total RNA
 
Description CBA/Ca mouse bone marrow cells were culture with GM-CSF for 7 days in the presence of 1 alpha 25 dihydroxyvitamin D3 (10^-7M) from day 3.
 
Submission date Feb 04, 2003
Last update date Nov 19, 2008
Contact name Steve Cobbold
E-mail(s) stephen.cobbold@path.ox.ac.uk
Phone +44-(0)1865-275504
Fax +44-(0)1865-275501
URL http://www.molbiol.ox.ac.uk/pathology/tig/welcome.html
Organization name University of Oxford
Department Sir William Dunn School of Pathology
Lab Therapeutic Immunology Group
Street address South Parks Road
City Oxford
State/province Oxfordshire
ZIP/Postal code OX1 3RE
Country United Kingdom
 
Platform ID GPL11
Series (1)
GSE1316 IL-10-conditioned dendritic cells elicit innate inflammatory gene products in response to danger signals

Data table header descriptions
TAG 10 base pair SAGE Tag
COUNT Absolute count of each Tag in library
TPM tags per million

Data table
TAG COUNT TPM
CCTCAGCCTG 435 21269.31
TTGGTGAAGG 322 15744.18
CAAACCTCCA 317 15499.71
AACTGAGGGG 287 14032.86
TCAGGCTGCC 240 11734.79
AGGCAGACAG 224 10952.47
CAAACACCGT 209 10219.05
AACGGCTAAA 183 8947.78
CCCTGGGTTC 170 8312.15
GCCTCCAAGG 157 7676.51
GTGGCTCACA 147 7187.56
CTGAGAGAGA 140 6845.30
AGAGCGAAGT 135 6600.82
GATTCCGTGA 133 6503.03
TGTCAGTCTG 133 6503.03
GCCTTTATGA 131 6405.24
ATACTGACAT 129 6307.45
CACAAACGGT 124 6062.98
GTTCAAGTGA 121 5916.29
GCCAAGTGGA 95 4645.02

Total number of rows: 7523

Table truncated, full table size 140 Kbytes.




Supplementary data files not provided

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