NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM383703 Query DataSets for GSM383703
Status Public on Mar 20, 2009
Title SAGE_Brain_astrocytoma_grade_III_B_H272
Sample type SAGE
Anchor NlaIII
Tag Count 96059
Tag Length 10
 
Source name astrocytoma grade iii, brain, bulk, adult, female, short sage
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
age: 43 yrs old
sex: female
cell type: Anaplastic GradeIII Astrocytoma
Biomaterial provider Duke Brain Tissue Bank
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 563
Tagging_enzyme: BsmF I
Library_producer: Jennifer B. Edwards, M.S.
Laboratory: Riggins Lab at Duke.
References: K Boon et al., BMC Cancer 4, 39 [PUBMED=15265232]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 84 874.46
AAAAAAAAAG 2 20.82
AAAAAAAAGA 3 31.23
AAAAAAAAGC 1 10.41
AAAAAAAAGG 1 10.41
AAAAAAAATG 1 10.41
AAAAAAACAG 1 10.41
AAAAAAAGAA 1 10.41
AAAAAAATAA 2 20.82
AAAAAAATCA 2 20.82
AAAAAAATGT 1 10.41
AAAAAAATTT 1 10.41
AAAAAACAGC 4 41.64
AAAAAACATC 1 10.41
AAAAAACATT 1 10.41
AAAAAACCAA 1 10.41
AAAAAACCCA 18 187.38
AAAAAACTAC 1 10.41
AAAAAACTCC 7 72.87
AAAAAACTGG 1 10.41

Total number of rows: 34171

Table truncated, full table size 636 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap