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Sample GSM383726 Query DataSets for GSM383726
Status Public on Mar 20, 2009
Title SAGE_Brain_glioblastoma_B_pooled
Sample type SAGE
Anchor NlaIII
Tag Count 56428
Tag Length 10
 
Source name brain, glioblastoma multiforme, non-normalized, short SAGE, bulk
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
cell type: glioblastoma, cerebral cortex
other information: 5 pooled Duke glioblastoma multiforme primary tumors.
Biomaterial provider Duke Brain Tumor Bank
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 7
Tagging_enzyme: BsmF I
Old_library_name: SAGE_pooled_GBM
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 81 1435.46
AAAAAAAAAG 1 17.72
AAAAAAAAGC 1 17.72
AAAAAAAATT 1 17.72
AAAAAAACTC 2 35.44
AAAAAAATGG 1 17.72
AAAAAACACT 1 17.72
AAAAAACCCA 7 124.05
AAAAAACTAA 1 17.72
AAAAAACTCC 2 35.44
AAAAAACTGC 1 17.72
AAAAAAGACT 1 17.72
AAAAAAGAGG 1 17.72
AAAAAAGGCT 1 17.72
AAAAAATACA 2 35.44
AAAAAATCGA 1 17.72
AAAAAATGGG 1 17.72
AAAAAATGGT 1 17.72
AAAAACAAAA 1 17.72
AAAAACGCCA 1 17.72

Total number of rows: 24020

Table truncated, full table size 447 Kbytes.




Supplementary data files not provided
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