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Sample GSM383732

Query DataSets for GSM383732

Status

Public on Mar 20, 2009

Title

SAGE_Brain_glioblastoma_CL_H392

Sample type

SAGE

Anchor

NlaIII

Tag Count

55990

Tag Length

Source name

brain, glioblastoma multiforme, non-normalized, short SAGE, cell line

Organism

Homo sapiens

Characteristics

organ/tissue: brain
tissue preparation: cell line
age: 65
sex: female
cell type: glioblastoma, cerebral cortex
mutations: No 17p loss or p53 mutations detected, Rasheed et al Can. Res. 54 p1324

Biomaterial provider

Linda Cleveland and Sandra Bigner, Duke University

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 3
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_H392
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	33	589.39
AAAAAAAAAG	2	35.72
AAAAAAAACA	1	17.86
AAAAAAAAGA	2	35.72
AAAAAACAAA	2	35.72
AAAAAACCCA	3	53.58
AAAAAACTCC	1	17.86
AAAAAACTGG	1	17.86
AAAAAAGAAA	1	17.86
AAAAAAGATT	1	17.86
AAAAAAGCAG	2	35.72
AAAAAAGCTG	1	17.86
AAAAAAGGAC	1	17.86
AAAAAATGGT	1	17.86
AAAAAATTTG	1	17.86
AAAAACAGCC	1	17.86
AAAAACCATA	1	17.86
AAAAACTCAC	1	17.86
AAAAAGAAAA	1	17.86
AAAAAGCAGA	5	89.30

Total number of rows: 19417

Table truncated, full table size 362 Kbytes.

Supplementary data files not provided