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Sample GSM383740 Query DataSets for GSM383740
Status Public on Mar 20, 2009
Title SAGE_Brain_medulloblastoma_B_96-04-P019
Sample type SAGE
Anchor NlaIII
Tag Count 52645
Tag Length 10
 
Source name medulloblastoma, cerebellum, bulk, non-normalized, short SAGE
Organism Homo sapiens
Characteristics organ/tissue: cerebellum
tissue preparation: bulk
age: 6
sex: male
cell type: medulloblastoma, cerebellum
Biomaterial provider Collaborative Human Tissue Network (CHTN) and Children's Oncology Group (COG)
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 123
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_96-04-P019
Library_producer: Jennifer B. Edwards
Laboratory: Gregory Riggins, Duke University Medical Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 445 8452.84
AAAAAAAAAC 4 75.98
AAAAAAAAAG 6 113.97
AAAAAAAAAT 2 37.99
AAAAAAAACA 1 19.00
AAAAAAAAGA 8 151.96
AAAAAAAAGC 1 19.00
AAAAAAAAGT 1 19.00
AAAAAAAATC 1 19.00
AAAAAAAATG 1 19.00
AAAAAAACAA 3 56.99
AAAAAAACTC 1 19.00
AAAAAAAGAA 3 56.99
AAAAAAAGAG 2 37.99
AAAAAAAGCA 2 37.99
AAAAAAAGTC 1 19.00
AAAAAAATAA 1 19.00
AAAAAAATCA 1 19.00
AAAAAAATCT 1 19.00
AAAAAAATGT 1 19.00

Total number of rows: 22017

Table truncated, full table size 410 Kbytes.




Supplementary data files not provided

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