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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Brain_medulloblastoma_CL_D283 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
66316 |
| Tag Length |
10 |
| |
|
| Source name |
cerebellum, medulloblastoma, cell line, short sage
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: cerebellum
tissue preparation: cell line
sex: unknown
cell type: medulloblastoma cell line
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| Biomaterial provider |
Henry S. Friedman, Dept. of Surgery, Duke University Medical center.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
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| Description |
CGAP_Numeric_library_ID: 243
Tagging_enzyme: BsmF I
Library_producer: Kathy Boon, PhD.
Laboratory: Riggins Laboratory Duke
References: K. Boon et al., Cancer Res. 65, 703-7 (2005) [PUBMED=15705863]|K. Boon et al., Oncogene 22, 7687-94 (2003) [PUBMED=14576832]
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
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| Phone |
301-496-1550
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| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
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| Department |
Cancer Genome Anatomy Project
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| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
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| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
316 |
4765.06 |
| AAAAAAAAAC |
5 |
75.40 |
| AAAAAAAAAG |
3 |
45.24 |
| AAAAAAAAAT |
7 |
105.56 |
| AAAAAAAAGA |
5 |
75.40 |
| AAAAAAAAGG |
1 |
15.08 |
| AAAAAAAATA |
1 |
15.08 |
| AAAAAAACAA |
1 |
15.08 |
| AAAAAAACAC |
1 |
15.08 |
| AAAAAAACAG |
1 |
15.08 |
| AAAAAAACCA |
1 |
15.08 |
| AAAAAAACTA |
2 |
30.16 |
| AAAAAAAGAA |
1 |
15.08 |
| AAAAAAAGAC |
1 |
15.08 |
| AAAAAAAGGC |
1 |
15.08 |
| AAAAAAATAA |
1 |
15.08 |
| AAAAAAATCA |
3 |
45.24 |
| AAAAAAATGA |
2 |
30.16 |
| AAAAAAATGC |
2 |
30.16 |
| AAAAAAATTT |
1 |
15.08 |
Total number of rows: 25279
Table truncated, full table size 471 Kbytes.
| Supplementary data files not provided |
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