NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM383766 Query DataSets for GSM383766
Status Public on Mar 20, 2009
Title SAGE_Brain_Medulloblastoma_CL_UW228-V2
Sample type SAGE
Anchor NlaIII
Tag Count 80827
Tag Length 10
 
Source name brain, cell line, medulloblastoma, cancer, extracted sage, female
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: cell line
age: 9
sex: female
cell type: Medulloblastoma
Biomaterial provider Dr. John Silber
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2084
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards
Laboratory: Dr. Gregory Riggins
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 41 507.26
AAAAAAAACT 1 12.37
AAAAAAAAGA 2 24.74
AAAAAAAAGG 3 37.12
AAAAAAAATG 1 12.37
AAAAAAAATT 2 24.74
AAAAAAACAG 2 24.74
AAAAAAACTA 1 12.37
AAAAAAACTT 1 12.37
AAAAAAAGAA 1 12.37
AAAAAAAGGA 1 12.37
AAAAAAAGTT 1 12.37
AAAAAAATAT 2 24.74
AAAAAAATCA 3 37.12
AAAAAAATGG 1 12.37
AAAAAAATTG 1 12.37
AAAAAAATTT 4 49.49
AAAAAACAAA 1 12.37
AAAAAACAGA 1 12.37
AAAAAACAGC 1 12.37

Total number of rows: 26713

Table truncated, full table size 498 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap