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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Brain_meningioma_grade_I_B_SF4271 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
69253 |
| Tag Length |
10 |
| |
|
| Source name |
brain, meningioma, grade i, benign hyperplasia, bulk, short sage
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: brain
tissue preparation: bulk
sex: unknown
cell type: benign meningioma of the meningothelial subtype
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| Biomaterial provider |
Brain Tumor Tissue Bank, University of California, San Francisco
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
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| Description |
CGAP_Numeric_library_ID: 526
Tagging_enzyme: BsmF I
Library_producer: Anita Lal
Laboratory: Meningioma Research Laboratory, UCSF
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
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| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
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| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
|
| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
2 |
28.88 |
| AAAAAAAAAC |
1 |
14.44 |
| AAAAAAAACA |
1 |
14.44 |
| AAAAAAAAGA |
1 |
14.44 |
| AAAAAAACAC |
1 |
14.44 |
| AAAAAAACCC |
12 |
173.28 |
| AAAAAAAGGC |
1 |
14.44 |
| AAAAAAAGTG |
1 |
14.44 |
| AAAAAAATAT |
1 |
14.44 |
| AAAAAAATGG |
1 |
14.44 |
| AAAAAAATTG |
2 |
28.88 |
| AAAAAACAGG |
1 |
14.44 |
| AAAAAACCCA |
11 |
158.84 |
| AAAAAACCCG |
1 |
14.44 |
| AAAAAACCCT |
1 |
14.44 |
| AAAAAACTCC |
1 |
14.44 |
| AAAAAAGGTG |
1 |
14.44 |
| AAAAAAGTCT |
1 |
14.44 |
| AAAAAATAAA |
1 |
14.44 |
| AAAAAATAGT |
1 |
14.44 |
Total number of rows: 24434
Table truncated, full table size 455 Kbytes.
| Supplementary data files not provided |
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