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Sample GSM383773 Query DataSets for GSM383773
Status Public on Mar 20, 2009
Title SAGE_Brain_normal_cerebellum_B_BB542
Sample type SAGE
Anchor NlaIII
Tag Count 40500
Tag Length 10
 
Source name normal, cerebellum, bulk, non-normalized, short sage
Organism Homo sapiens
Characteristics organ/tissue: cerebellum
tissue preparation: bulk
sex: unknown
cell type: normal cerebellum
Biomaterial provider Duke Bryan Alzheimer Disease Reseach Center
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 55
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_BB542_normal_cerebellum
Library_producer: I-Mei Siu
Laboratory: Gregory Riggins, Duke University Medical Center
References: Sui I-M, Lal A, and Riggins GJ: A Database for Normal Gene Expression in the Human Brain. Gene Expression Patterns 1:33-38 (2001)
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 32 790.12
AAAAAAAAAG 1 24.69
AAAAAAAAAT 1 24.69
AAAAAAAAGG 1 24.69
AAAAAAAAGT 1 24.69
AAAAAAACAA 1 24.69
AAAAAAACAG 1 24.69
AAAAAAACGG 1 24.69
AAAAAAATCA 3 74.07
AAAAAAATCT 1 24.69
AAAAAACAGC 2 49.38
AAAAAACATA 1 24.69
AAAAAACATT 1 24.69
AAAAAACCCA 1 24.69
AAAAAACCTA 1 24.69
AAAAAACTCC 3 74.07
AAAAAAGATG 1 24.69
AAAAAAGTCT 1 24.69
AAAAAATAAG 1 24.69
AAAAAATGAA 2 49.38

Total number of rows: 19163

Table truncated, full table size 357 Kbytes.




Supplementary data files not provided

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