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Sample GSM383774

Query DataSets for GSM383774

Status

Public on Mar 20, 2009

Title

SAGE_Brain_normal_cortex_B_BB542

Sample type

SAGE

Anchor

NlaIII

Tag Count

94233

Tag Length

Source name

cortex, normal, non-normalized, short SAGE, bulk

Organism

Homo sapiens

Characteristics

organ/tissue: brain
tissue preparation: bulk
age: 82
sex: male
cell type: normal whitematter, cerebral cortex
other information: Brain, normal, greater than 95% white matter. Post-mortem delay of 3:15. 82 year old male.

Biomaterial provider

Duke Bryan Alzheimer Disease Reseach Center

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 8
Tagging_enzyme: BsmF I
Old_library_name: SAGE_BB542_whitematter
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	224	2377.09
AAAAAAAAAC	1	10.61
AAAAAAAAAG	6	63.67
AAAAAAAAAT	3	31.84
AAAAAAAAGA	1	10.61
AAAAAAAAGT	1	10.61
AAAAAAAATA	1	10.61
AAAAAAAATT	1	10.61
AAAAAAACAG	1	10.61
AAAAAAACTA	3	31.84
AAAAAAAGAA	2	21.22
AAAAAAAGCA	1	10.61
AAAAAAAGGA	1	10.61
AAAAAAATTT	2	21.22
AAAAAACAAC	1	10.61
AAAAAACACA	1	10.61
AAAAAACAGC	6	63.67
AAAAAACAGG	1	10.61
AAAAAACCCA	13	137.96
AAAAAACCTA	1	10.61

Total number of rows: 31683

Table truncated, full table size 590 Kbytes.

Supplementary data files not provided