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Sample GSM383777 Query DataSets for GSM383777
Status Public on Mar 20, 2009
Title SAGE_Brain_normal_peds_cortex_B_H1571
Sample type SAGE
Anchor NlaIII
Tag Count 77554
Tag Length 10
 
Source name brain, cortex, normal, non-normalized, short SAGE, bulk
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
sex: male
cell type: normal pediatric cortex
other information: Normal frontal cortex, bulk tissue, from 15 month male seizure patient (partial lobectomy).
Biomaterial provider Dr. Phillip Cogen and Dr. Cynthia J. Tifft.
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 133
Tagging_enzyme: BsmF I
Old_library_name: SAGE_normal_pediatric_cortex_H1571
Library_producer: Deric Olschner
Laboratory: Gregory Riggins, Duke University Medical Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 395 5093.23
AAAAAAAAAC 1 12.89
AAAAAAAAAG 5 64.47
AAAAAAAAAT 2 25.79
AAAAAAAAGA 1 12.89
AAAAAAAAGG 1 12.89
AAAAAAAAGT 1 12.89
AAAAAAAATC 1 12.89
AAAAAAACAG 2 25.79
AAAAAAACCC 1 12.89
AAAAAAACTC 1 12.89
AAAAAAAGAA 1 12.89
AAAAAAAGCT 1 12.89
AAAAAAATCA 1 12.89
AAAAAAATTC 1 12.89
AAAAAACAGC 5 64.47
AAAAAACATC 2 25.79
AAAAAACCCA 30 386.83
AAAAAACCTG 1 12.89
AAAAAACTCC 1 12.89

Total number of rows: 24161

Table truncated, full table size 450 Kbytes.




Supplementary data files not provided

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