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Sample GSM383786 Query DataSets for GSM383786
Status Public on Mar 20, 2009
Title SAGE_Breast_carcinoma_associated_myofibroblast_CD10+_AP_IDC9
Sample type SAGE
Anchor NlaIII
Tag Count 63539
Tag Length 10
 
Source name breast, myofibroblast, tumor associated, antibody purified, adult, female, extracted short sage
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: antibody purified
sex: female
cell type: Grade I, ER+, PR+, Her2- invasive ductal
other information: CD10+ purified myofibroblasts from invasive breast cancer Library name in Cancer Cell, 2004, 6(1):17-32 "I-MYOFIB-9-myofibroblasts"
Biomaterial provider Andrea Richardson, MD, PhD
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 1169
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 156 2455.19
AAAAAAAAAG 4 62.95
AAAAAAAAAT 3 47.22
AAAAAAAACC 1 15.74
AAAAAAAACT 1 15.74
AAAAAAAAGA 2 31.48
AAAAAAAAGG 1 15.74
AAAAAAAATA 1 15.74
AAAAAAAATT 1 15.74
AAAAAAACTG 1 15.74
AAAAAAAGAA 4 62.95
AAAAAAAGGA 1 15.74
AAAAAAAGGC 1 15.74
AAAAAAAGGG 1 15.74
AAAAAAATCA 1 15.74
AAAAAAATCT 1 15.74
AAAAAAATGT 1 15.74
AAAAAAATTT 2 31.48
AAAAAACATT 1 15.74
AAAAAACCAG 1 15.74

Total number of rows: 22371

Table truncated, full table size 417 Kbytes.




Supplementary data files not provided

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