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Sample GSM383790 Query DataSets for GSM383790
Status Public on Mar 20, 2009
Title SAGE_Breast_carcinoma_B_95-347
Sample type SAGE
Anchor NlaIII
Tag Count 67070
Tag Length 10
 
Source name mammary gland, ductal, carcinoma, non-normalized, short SAGE, bulk
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: bulk
age: 52.8
sex: female
cell type: carcinoma
mutations: ER+, PR+
other information: Invasive ductal carcinoma - primary tumor. Age at discovery 52.8 years, 16 postive lymph nodes, 3.2 cm primary tumor, histo grade = 3, nuclear grade = 3, ER+, PR+.
Biomaterial provider Jeffrey Marks, Duke University Medical Center
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 82
Tagging_enzyme: BsmF I
Old_library_name: SAGE_95-347
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
References: D. A. Porter et al., Cancer Res 61, 5697-702 (2001) [PUBMED=11479200]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 67 998.96
AAAAAAAAGA 2 29.82
AAAAAAAAGG 1 14.91
AAAAAAAATG 1 14.91
AAAAAAACAA 1 14.91
AAAAAAAGCA 1 14.91
AAAAAAATAG 1 14.91
AAAAAAATCA 2 29.82
AAAAAACAAC 1 14.91
AAAAAACATT 1 14.91
AAAAAACCCA 32 477.11
AAAAAACCCC 1 14.91
AAAAAACTCC 5 74.55
AAAAAAGAAA 1 14.91
AAAAAAGCAA 1 14.91
AAAAAAGGAG 1 14.91
AAAAAATAAA 2 29.82
AAAAAATACA 1 14.91
AAAAAATCCC 1 14.91
AAAAAATCGA 1 14.91

Total number of rows: 22561

Table truncated, full table size 420 Kbytes.




Supplementary data files not provided

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