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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Breast_carcinoma_B_BWHT18_DCIS |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
50701 |
| Tag Length |
10 |
| |
|
| Source name |
breast, bulk, carcinoma, in situ, ductal, extracted short sage, adult, female
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: mammary gland
tissue preparation: bulk
age: 44 yrs
sex: female
cell type: primary ductal in situ breast carcinoma, intermediate grade
other information: 1. Short SAGE tags are extracted from Long SAGE data. 2. Estrogen and progesteron receptor positive, erbB2 negative, 0/25 lymph nodes (no lymph node metastasis)
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| Biomaterial provider |
Susan Lester
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
|
| |
|
| Description |
CGAP_Numeric_library_ID: 431
Tagging_enzyme: Mme I
Library_producer: Anna Merlos-Suarez
Laboratory: Polyak
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
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| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
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| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
9 |
177.51 |
| AAAAAAAAAC |
1 |
19.72 |
| AAAAAAAAGA |
1 |
19.72 |
| AAAAAAAAGG |
3 |
59.17 |
| AAAAAAACCT |
1 |
19.72 |
| AAAAAACATT |
1 |
19.72 |
| AAAAAACCCA |
4 |
78.89 |
| AAAAAACTCC |
2 |
39.45 |
| AAAAAAGTTC |
1 |
19.72 |
| AAAAAATACA |
1 |
19.72 |
| AAAAAATCAG |
1 |
19.72 |
| AAAAAATGGT |
1 |
19.72 |
| AAAAAATGTT |
1 |
19.72 |
| AAAAACAAAT |
1 |
19.72 |
| AAAAACGGGG |
1 |
19.72 |
| AAAAACTGGG |
1 |
19.72 |
| AAAAAGAAGA |
1 |
19.72 |
| AAAAAGCACA |
1 |
19.72 |
| AAAAAGCAGA |
5 |
98.62 |
| AAAAAGGTAT |
2 |
39.45 |
Total number of rows: 19124
Table truncated, full table size 356 Kbytes.
| Supplementary data files not provided |
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