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Status
Public on Mar 20, 2009
Title
SAGE_Breast_carcinoma_B_CT15_IDC
Sample type
SAGE
Anchor
NlaIII
Tag Count
21840
Tag Length
10
Source name
breast, carcinoma, ductal, invasive, bulk, extracted short sage, female, adult
Organism
Homo sapiens
Characteristics
organ/tissue: mammary gland tissue preparation: bulk age: 71 yrs sex: female cell type: primary grade III. ductal invasive breast carcinoma other information: Short tags are extracted from the long SAGE data
Biomaterial provider
Jasminka Razumovic
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 423 Tagging_enzyme: Mme I Library_producer: Anna Merlos-Suarez Laboratory: Polyak
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL4
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309
Cancer Genome Anatomy Project (CGAP) Human SAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
42
1923.08
AAAAAAAAGA
1
45.79
AAAAAAAAGG
1
45.79
AAAAAAAATG
1
45.79
AAAAAAAATT
1
45.79
AAAAAAATCA
1
45.79
AAAAAACCCA
3
137.36
AAAAAACTCA
1
45.79
AAAAAACTCC
3
137.36
AAAAAATAAC
1
45.79
AAAAACAATT
1
45.79
AAAAACACAC
1
45.79
AAAAACCATA
2
91.58
AAAAACGCCA
1
45.79
AAAAAGAAAA
1
45.79
AAAAAGAAAC
1
45.79
AAAAAGATAA
1
45.79
AAAAAGATTG
1
45.79
AAAAAGCACA
1
45.79
AAAAAGCAGA
1
45.79
Total number of rows: 9652 Table truncated, full table size 180 Kbytes .Supplementary data files not provided