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Sample GSM383799 Query DataSets for GSM383799
Status Public on Mar 20, 2009
Title SAGE_Breast_carcinoma_CL_MCF7estradiol_10H
Sample type SAGE
Anchor NlaIII
Tag Count 60725
Tag Length 10
 
Source name mammary gland, carcinoma, cell line, non-normalized, short sage
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: cell line
sex: female
cell type: carcinoma
Biomaterial provider American Tissue Type Collection
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 79
Tagging_enzyme: BsmF I
Old_library_name: SAGE_SciencePark_MCF7_estradiol_10h
Laboratory: Marcelo Aldaz, M.D. Anderson Cancer Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 102 1679.70
AAAAAAAAAC 6 98.81
AAAAAAAAAG 6 98.81
AAAAAAAAAT 2 32.94
AAAAAAAACT 1 16.47
AAAAAAAAGA 1 16.47
AAAAAAACAT 1 16.47
AAAAAAATCA 1 16.47
AAAAAACAGA 1 16.47
AAAAAACCCA 13 214.08
AAAAAACCCG 1 16.47
AAAAAACCTA 2 32.94
AAAAAACCTT 1 16.47
AAAAAACTCC 1 16.47
AAAAAAGAAA 1 16.47
AAAAAAGAAG 2 32.94
AAAAAATAAA 2 32.94
AAAAAATCCG 1 16.47
AAAAAATGAA 2 32.94
AAAAAATTGC 1 16.47

Total number of rows: 17213

Table truncated, full table size 321 Kbytes.




Supplementary data files not provided

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