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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Breast_carcinoma_epithelium_BEREP4+_AP_DCIS7 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
89184 |
| Tag Length |
10 |
| |
|
| Source name |
mammary gland, epithelium, carcinoma, antibody purified, non-normalized, short sage, female, adult
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: mammary gland
tissue preparation: antibody purified
age: 29
sex: female
cell type: breast carcinoma epithelium
other information: Invasive breast tumor(~2cm), extensive high-grade comedo DCIS (~4 cm), positive lymph nodes. Purified using BerEP4 beads (Dynal). Library name in Cancer Cell, 2004, 6(1):17-32 "D-EPI-7 epithelial cells"
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| Biomaterial provider |
Andrea Richardson
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
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| Description |
CGAP_Numeric_library_ID: 157
Tagging_enzyme: BsmF I
Library_producer: Kornelia Polyak
Laboratory: Kornelia Polyak, Dana-Farber Cancer Institute
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
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| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
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| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
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| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
28 |
313.96 |
| AAAAAAAAAC |
1 |
11.21 |
| AAAAAAAATG |
1 |
11.21 |
| AAAAAAAATT |
1 |
11.21 |
| AAAAAAACGT |
1 |
11.21 |
| AAAAAAACTG |
1 |
11.21 |
| AAAAAAATCA |
3 |
33.64 |
| AAAAAAATGG |
1 |
11.21 |
| AAAAAAATTT |
3 |
33.64 |
| AAAAAACAAA |
5 |
56.06 |
| AAAAAACAGC |
1 |
11.21 |
| AAAAAACATT |
1 |
11.21 |
| AAAAAACCCA |
5 |
56.06 |
| AAAAAACTAC |
2 |
22.43 |
| AAAAAACTCA |
1 |
11.21 |
| AAAAAACTCC |
3 |
33.64 |
| AAAAAACTGA |
1 |
11.21 |
| AAAAAACTGG |
1 |
11.21 |
| AAAAAAGTCC |
1 |
11.21 |
| AAAAAAGTCT |
3 |
33.64 |
Total number of rows: 31311
Table truncated, full table size 583 Kbytes.
| Supplementary data files not provided |
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