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Sample GSM383812

Query DataSets for GSM383812

Status

Public on Mar 20, 2009

Title

SAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC9

Sample type

SAGE

Anchor

NlaIII

Tag Count

65935

Tag Length

Source name

breast, carcinoma, antibody purified, epithelium, extracted short sage, female, adult

Organism

Homo sapiens

Characteristics

organ/tissue: mammary gland
tissue preparation: antibody purified
sex: female
cell type: Grade I, ER+, PR+, Her2- invasive ductal carcinoma
other information: BerEP4 purified epithelial cells from invasive breast cancer. Library name in Cancer Cell, 2004, 6(1):17-32 "I-EPI-9 epithelial cells"

Biomaterial provider

Andrea Richardson, MD, PhD

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 1163
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	155	2350.80
AAAAAAAAAG	3	45.50
AAAAAAAAAT	1	15.17
AAAAAAAAGA	4	60.67
AAAAAAAAGG	2	30.33
AAAAAAAATG	2	30.33
AAAAAAAGAA	1	15.17
AAAAAAAGCA	1	15.17
AAAAAAATAA	3	45.50
AAAAAAATAG	2	30.33
AAAAAAATCA	2	30.33
AAAAAAATGG	1	15.17
AAAAAAATTT	10	151.66
AAAAAACAAA	1	15.17
AAAAAACAAG	1	15.17
AAAAAACCCA	5	75.83
AAAAAACCCC	1	15.17
AAAAAACGTG	1	15.17
AAAAAACTCC	1	15.17
AAAAAAGAAA	1	15.17

Total number of rows: 25520

Table truncated, full table size 475 Kbytes.

Supplementary data files not provided