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Sample GSM383815

Query DataSets for GSM383815

Status

Public on Mar 20, 2009

Title

SAGE_Breast_carcinoma_epithelium_CD24+_AP_IDC28

Sample type

SAGE

Anchor

NlaIII

Tag Count

57956

Tag Length

Source name

human, breast/mammary gland, antibody purified, cancer, invasive ductal carcinoma, high-grade, er+,pr+,her2-, female, adult, extracted short sage

Organism

Homo sapiens

Characteristics

organ/tissue: mammary gland
tissue preparation: antibody purified
age: 50
sex: female
cell type: Invasive ductal carcinoma, high-grade, ER+,PR+,HER2-
other information: cells purified using CD24 antibody, these cells are CD24+ more differentiated breast cancer cells

Biomaterial provider

Andrea Richardson, MD,PhD, BWH

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 2168
Tagging_enzyme: Mme I
Library_producer: Michail Shipitsin, PhD, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	61	1052.52
AAAAAAAAGA	3	51.76
AAAAAAAAGG	1	17.25
AAAAAAAATT	1	17.25
AAAAAAAGAA	1	17.25
AAAAAAAGCA	1	17.25
AAAAAAATAA	1	17.25
AAAAAAATGA	1	17.25
AAAAAAATTT	1	17.25
AAAAAACAAA	1	17.25
AAAAAACATT	1	17.25
AAAAAACCCA	9	155.29
AAAAAAGAAA	1	17.25
AAAAAATAAC	1	17.25
AAAAAATCCC	1	17.25
AAAAAATGAA	1	17.25
AAAAAATGGA	1	17.25
AAAAAATGGT	1	17.25
AAAAAATTAA	1	17.25
AAAAAATTTG	1	17.25

Total number of rows: 20405

Table truncated, full table size 381 Kbytes.

Supplementary data files not provided