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Status |
Public on Mar 20, 2009 |
Title |
SAGE_Breast_carcinoma_epithelium_X_MUC1+_AP |
Sample type |
SAGE |
Anchor |
NlaIII
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Tag Count |
75147 |
Tag Length |
10 |
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Source name |
human, breast/mammary gland, antibody purified, cancer, muc1 bead purified cells from mcf10dcis xenografts, female, 8q gain, cdkn1a and lrp1b homozygous deletions, extracted short sage
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Organism |
Homo sapiens |
Characteristics |
organ/tissue: mammary gland tissue preparation: antibody purified sex: female cell type: MUC1 bead purified cells from MCF10DCIS xenografts mutations: 8q gain, CDKN1A and LRP1B homozygous deletions
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Biomaterial provider |
Fred Miller, Karmanos Institute, Detroit, MI
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Extracted molecule |
total RNA |
Extraction protocol |
N/A
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Description |
CGAP_Numeric_library_ID: 2346 Tagging_enzyme: Mme I Library_producer: Min Hu, PhD Laboratory: Polyak Lab, Dana-Farber Cancer Institute, Boston, MA
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
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Phone |
301-496-1550
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URL |
http://cgap.nci.nih.gov/
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Organization name |
National Cancer Institute
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Department |
Cancer Genome Anatomy Project
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Street address |
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
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Platform ID |
GPL4 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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Data table header descriptions |
TAG |
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COUNT |
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TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAA |
22 |
292.76 |
AAAAAAAAAG |
1 |
13.31 |
AAAAAAAAAT |
2 |
26.61 |
AAAAAAAAGG |
1 |
13.31 |
AAAAAAAATG |
4 |
53.23 |
AAAAAAACCC |
1 |
13.31 |
AAAAAAAGAA |
3 |
39.92 |
AAAAAAAGCG |
1 |
13.31 |
AAAAAAAGGA |
2 |
26.61 |
AAAAAAATCA |
1 |
13.31 |
AAAAAAATGG |
1 |
13.31 |
AAAAAAATTT |
4 |
53.23 |
AAAAAACATT |
1 |
13.31 |
AAAAAACCCA |
4 |
53.23 |
AAAAAACCCC |
1 |
13.31 |
AAAAAACTCC |
1 |
13.31 |
AAAAAAGAAC |
1 |
13.31 |
AAAAAAGAAT |
1 |
13.31 |
AAAAAAGAGT |
1 |
13.31 |
AAAAAAGATG |
1 |
13.31 |
Total number of rows: 26582
Table truncated, full table size 495 Kbytes.
Supplementary data files not provided |
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