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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Breast_carcinoma_myoepithelium_X_ITGB6+_AP |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
78785 |
| Tag Length |
10 |
| |
|
| Source name |
human, breast/mammary gland, antibody purified, cancer, itgb6 bead purified cells from mcf10dcis xenografts, female, 8q gain, cdkn1a and lrp1b homozygous deletions, extracted short sage
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: mammary gland
tissue preparation: antibody purified
sex: female
cell type: ITGB6 bead purified cells from MCF10DCIS xenografts
mutations: 8q gain, CDKN1A and LRP1B homozygous deletions
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| Biomaterial provider |
Fred Miller, Karmanos Institute, Detroit, MI
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
|
| |
|
| Description |
CGAP_Numeric_library_ID: 2344
Tagging_enzyme: Mme I
Library_producer: Min Hu, PhD
Laboratory: Polyak Lab, Dana-Farber Cancer Institute, Boston, MA
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
|
| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
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| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
14 |
177.70 |
| AAAAAAAAAT |
1 |
12.69 |
| AAAAAAAACT |
1 |
12.69 |
| AAAAAAAAGA |
5 |
63.46 |
| AAAAAAAATG |
2 |
25.39 |
| AAAAAAACTC |
2 |
25.39 |
| AAAAAAAGAA |
1 |
12.69 |
| AAAAAAAGTT |
1 |
12.69 |
| AAAAAAATGA |
1 |
12.69 |
| AAAAAAATGT |
1 |
12.69 |
| AAAAAAATTT |
4 |
50.77 |
| AAAAAACAAA |
2 |
25.39 |
| AAAAAACATT |
3 |
38.08 |
| AAAAAACCCA |
5 |
63.46 |
| AAAAAACCCC |
1 |
12.69 |
| AAAAAACTCA |
1 |
12.69 |
| AAAAAACTCC |
1 |
12.69 |
| AAAAAACTGA |
2 |
25.39 |
| AAAAAAGATG |
1 |
12.69 |
| AAAAAAGGAG |
5 |
63.46 |
Total number of rows: 26106
Table truncated, full table size 486 Kbytes.
| Supplementary data files not provided |
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