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Sample GSM383826 Query DataSets for GSM383826
Status Public on Mar 20, 2009
Title SAGE_Breast_fibroadenoma_MD
Sample type SAGE
Anchor NlaIII
Tag Count 55688
Tag Length 10
 
Source name breast, benign neoplasia, microscope dissected, juvenile, female, extracted short sage
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: microscope dissected
age: 11
sex: female
cell type: juvenile fibroadenoma
other information: Library name in Cancer Cell, 2004, 6(1):17-32 "FA"
Biomaterial provider Pedram Argani, MD, Johns Hopkins University
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 1167
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 259 4650.91
AAAAAAAAAG 3 53.87
AAAAAAAAAT 2 35.91
AAAAAAAAGA 3 53.87
AAAAAAAAGG 1 17.96
AAAAAAAATC 1 17.96
AAAAAAAATT 2 35.91
AAAAAAACCC 1 17.96
AAAAAAAGAA 4 71.83
AAAAAAAGCA 1 17.96
AAAAAAAGTC 1 17.96
AAAAAAATAA 2 35.91
AAAAAAATAG 1 17.96
AAAAAAATCA 2 35.91
AAAAAAATCT 1 17.96
AAAAAACAAA 1 17.96
AAAAAACAAC 1 17.96
AAAAAACACA 1 17.96
AAAAAACATT 4 71.83
AAAAAACCCA 9 161.61

Total number of rows: 21922

Table truncated, full table size 408 Kbytes.




Supplementary data files not provided

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