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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Breast_normal_epithelium_MUC1+_AP_N15 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
71704 |
| Tag Length |
10 |
| |
|
| Source name |
human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, muc1+ mammary epithelial cells, female, adult, extracted short sage
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: mammary gland
tissue preparation: antibody purified
age: 22
sex: female
cell type: normal breast tissue reduction
other information: cells purified using MUC1 antibody, these cells are MUC1+ mammary epithelial cells
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| Biomaterial provider |
Andrea Richardson, MD,PhD, BWH
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| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
|
| Description |
CGAP_Numeric_library_ID: 2394
Tagging_enzyme: Mme I
Library_producer: Noga Qimron MSc/ MIn Hu PhD, DFCI
Laboratory: Polyak Lab, DFCI
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
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| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
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| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
4 |
55.78 |
| AAAAAAAAAT |
2 |
27.89 |
| AAAAAAAAGA |
1 |
13.95 |
| AAAAAAAATC |
1 |
13.95 |
| AAAAAAAGAA |
1 |
13.95 |
| AAAAAAAGGG |
1 |
13.95 |
| AAAAAAATAA |
2 |
27.89 |
| AAAAAAATCA |
1 |
13.95 |
| AAAAAACAAA |
2 |
27.89 |
| AAAAAACCAA |
1 |
13.95 |
| AAAAAACCCA |
8 |
111.57 |
| AAAAAACCCC |
1 |
13.95 |
| AAAAAACTCC |
1 |
13.95 |
| AAAAAAGAAT |
1 |
13.95 |
| AAAAAAGAGC |
1 |
13.95 |
| AAAAAAGCAC |
1 |
13.95 |
| AAAAAAGTGG |
1 |
13.95 |
| AAAAAATATC |
1 |
13.95 |
| AAAAAATATG |
1 |
13.95 |
| AAAAAATCAC |
1 |
13.95 |
Total number of rows: 24765
Table truncated, full table size 461 Kbytes.
| Supplementary data files not provided |
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