GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM383841

Query DataSets for GSM383841

Status

Public on Mar 20, 2009

Title

SAGE_Breast_normal_myoepithelium_CD10+_AP_N1

Sample type

SAGE

Anchor

NlaIII

Tag Count

57222

Tag Length

Source name

mammary gland, myoepithelium, normal, antibody purified, non-normalized, short sage

Organism

Homo sapiens

Characteristics

organ/tissue: mammary gland
tissue preparation: antibody purified
age: 27
sex: female
cell type: breast myoepithelium
other information: normal mammary myoepithelial cells from breast reduction tissue of a 27 year old female. Antibody purified with CD10 to obtain myoepithelial cells. Library name in Cancer Cell, 2004, 6(1):17-32 "N-MYOEP-1 myoepithelial cells"

Biomaterial provider

Andrea Richardson, M.D., Ph.D.

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 131
Tagging_enzyme: BsmF I
Old_library_name: SAGE_breast_myoepithelial
Library_producer: Dale Porter, Ph.D.
Laboratory: Polyak lab, Dana-Farber Cancer Institute

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	11	192.23
AAAAAAAAAC	1	17.48
AAAAAAAAAT	1	17.48
AAAAAAAACA	1	17.48
AAAAAAAAGA	1	17.48
AAAAAAAGTA	2	34.95
AAAAAAATAG	1	17.48
AAAAAAATGT	1	17.48
AAAAAACACA	1	17.48
AAAAAACCCA	2	34.95
AAAAAACCCC	1	17.48
AAAAAAGACT	1	17.48
AAAAAAGCTT	1	17.48
AAAAAATAAT	1	17.48
AAAAAATAGT	1	17.48
AAAAAATGCT	2	34.95
AAAAAATGGT	4	69.90
AAAAAATTTG	2	34.95
AAAAACAAAT	1	17.48
AAAAACAAGA	1	17.48

Total number of rows: 26342

Table truncated, full table size 490 Kbytes.

Supplementary data files not provided