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Sample GSM383875 Query DataSets for GSM383875
Status Public on Mar 20, 2009
Title SAGE_Embryonic_stem_cell_H13_normal_p22_CL_SHE15
Sample type SAGE
Anchor NlaIII
Tag Count 221101
Tag Length 10
 
Source name embryonic stem cell, normal, cell line, male, extracted short sage, h13, wa13, mef
Organism Homo sapiens
Characteristics organ/tissue: stem cell
tissue preparation: cell line
age: p22
sex: male
Biomaterial provider Jamie Thomson
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 1386
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 111 502.03
AAAAAAAAAC 1 4.52
AAAAAAAAAG 1 4.52
AAAAAAAAAT 2 9.05
AAAAAAAACT 1 4.52
AAAAAAAAGA 9 40.71
AAAAAAAAGG 2 9.05
AAAAAAAATC 4 18.09
AAAAAAAATG 11 49.75
AAAAAAAATT 2 9.05
AAAAAAACAG 2 9.05
AAAAAAACTA 2 9.05
AAAAAAACTC 2 9.05
AAAAAAAGAA 2 9.05
AAAAAAAGAG 1 4.52
AAAAAAAGGG 2 9.05
AAAAAAATAA 1 4.52
AAAAAAATAG 2 9.05
AAAAAAATCA 1 4.52
AAAAAAATGA 13 58.80

Total number of rows: 47057

Table truncated, full table size 842 Kbytes.




Supplementary data files not provided

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