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Sample GSM383878 Query DataSets for GSM383878
Status Public on Mar 20, 2009
Title SAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES1
Sample type SAGE
Anchor NlaIII
Tag Count 151735
Tag Length 10
 
Source name embryonic stem cell, normal, cell line, short sage, female, h9, wa09, mef
Organism Homo sapiens
Characteristics organ/tissue: stem cell
tissue preparation: cell line
age: passage 38
sex: female
Biomaterial provider Jamie Thomson
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 844
Tagging_enzyme: BsmF I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 546 3598.38
AAAAAAAAAC 1 6.59
AAAAAAAAAG 8 52.72
AAAAAAAAAT 1 6.59
AAAAAAAACA 1 6.59
AAAAAAAACT 1 6.59
AAAAAAAAGA 8 52.72
AAAAAAAAGG 4 26.36
AAAAAAAATA 2 13.18
AAAAAAAATC 3 19.77
AAAAAAACAG 1 6.59
AAAAAAAGAA 7 46.13
AAAAAAAGAG 2 13.18
AAAAAAAGAT 1 6.59
AAAAAAAGCA 1 6.59
AAAAAAAGGA 1 6.59
AAAAAAAGGT 1 6.59
AAAAAAAGTA 2 13.18
AAAAAAATAA 1 6.59
AAAAAAATCA 3 19.77

Total number of rows: 37099

Table truncated, full table size 668 Kbytes.




Supplementary data files not provided

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