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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Esophagus_Dysplasia_B_HGD02 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
78611 |
| Tag Length |
10 |
| |
|
| Source name |
other, bulk, pre-cancer, high grade dysplasia, esophagus, extracted short sage, adult, male
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: other
tissue preparation: bulk
age: 69
sex: male
cell type: high grade dysplasia
|
| Biomaterial provider |
Dr. Mimi Canto, Dr. Jean Wang, and Dr. Elizabeth Montgomery
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
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| Description |
CGAP_Numeric_library_ID: 2146
Tagging_enzyme: Mme I
Library_producer: Dr. Hector Alvarez
Laboratory: Dr. Gregory Riggins and Dr. Anirban Maitra
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
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| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
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| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
20 |
254.42 |
| AAAAAAAAAC |
3 |
38.16 |
| AAAAAAAAAT |
3 |
38.16 |
| AAAAAAAAGA |
4 |
50.88 |
| AAAAAAAAGC |
1 |
12.72 |
| AAAAAAAAGG |
1 |
12.72 |
| AAAAAAAATA |
1 |
12.72 |
| AAAAAAAATG |
1 |
12.72 |
| AAAAAAACCC |
1 |
12.72 |
| AAAAAAACTA |
1 |
12.72 |
| AAAAAAAGAA |
3 |
38.16 |
| AAAAAAATAC |
1 |
12.72 |
| AAAAAAATCA |
2 |
25.44 |
| AAAAAAATGT |
1 |
12.72 |
| AAAAAACAGA |
1 |
12.72 |
| AAAAAACATT |
1 |
12.72 |
| AAAAAACCCA |
5 |
63.60 |
| AAAAAACCCT |
1 |
12.72 |
| AAAAAACTCA |
1 |
12.72 |
| AAAAAACTCC |
1 |
12.72 |
Total number of rows: 37508
Table truncated, full table size 697 Kbytes.
| Supplementary data files not provided |
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