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Sample GSM383896

Query DataSets for GSM383896

Status

Public on Mar 20, 2009

Title

SAGE_Heart_normal_B_1

Sample type

SAGE

Anchor

NlaIII

Tag Count

83063

Tag Length

Source name

heart, normal, short SAGE, non-normalized, bulk

Organism

Homo sapiens

Characteristics

organ/tissue: heart
tissue preparation: bulk
age: 56
sex: male
cell type: normal bulk heart
other information: Total RNA from Ambion, Cat #7966, Lot #051P43C

Biomaterial provider

Ambion, Catalogue # 7966, LOT #051P43C.

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 136
Tagging_enzyme: BsmF I
Old_library_name: SAGE_normal_heart
Library_producer: Deric Olschner
Laboratory: Gregory Riggins, Duke University Medical Center

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	203	2443.93
AAAAAAAAAG	2	24.08
AAAAAAAAAT	2	24.08
AAAAAAAAGA	1	12.04
AAAAAAAAGG	2	24.08
AAAAAAAATC	1	12.04
AAAAAAACAG	1	12.04
AAAAAAAGAA	1	12.04
AAAAAAAGCA	1	12.04
AAAAAAATAA	1	12.04
AAAAAAATAG	1	12.04
AAAAAAATCA	1	12.04
AAAAAAATGG	1	12.04
AAAAAAATGT	2	24.08
AAAAAAATTT	2	24.08
AAAAAACATC	2	24.08
AAAAAACCCA	4	48.16
AAAAAACTAT	1	12.04
AAAAAACTCC	4	48.16
AAAAAAGAAG	1	12.04

Total number of rows: 20156

Table truncated, full table size 376 Kbytes.

Supplementary data files not provided