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Sample GSM383897 Query DataSets for GSM383897
Status Public on Mar 20, 2009
Title SAGE_Kidney_carcinoma_B_D2
Sample type SAGE
Anchor NlaIII
Tag Count 100281
Tag Length 10
 
Source name kidney, bulk, transitional cell carcinoma, female, adult
Organism Homo sapiens
Characteristics organ/tissue: kidney
tissue preparation: bulk
age: 73
sex: female
cell type: Kidney transitional cell carcinoma
other information: Source: Clontech Total RNA, Cat.# 64012-1, Lot# 2120258. Right kidney; poorly differentiated with squamous differentiation (grade III-IV); extensive invasion seen in kidney, including renal tubules, lymphovascular areas and perinephric fat; no evidence of tumor in ureter, artery or vein.
Biomaterial provider Clontech, Total RNA, Cat. #64012-1, Lot # 2120258
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 223
Tagging_enzyme: BsmF I
Library_producer: Deric Olschner
Laboratory: Dr. Greg Riggins
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 72 717.98
AAAAAAAAAC 1 9.97
AAAAAAAAAG 1 9.97
AAAAAAAAAT 1 9.97
AAAAAAAACC 1 9.97
AAAAAAAACG 1 9.97
AAAAAAAAGA 1 9.97
AAAAAAAAGG 1 9.97
AAAAAAAATG 1 9.97
AAAAAAACAG 1 9.97
AAAAAAACCC 1 9.97
AAAAAAACCG 1 9.97
AAAAAAACTG 1 9.97
AAAAAAAGAA 1 9.97
AAAAAAAGCT 1 9.97
AAAAAAATCA 6 59.83
AAAAAAATCT 1 9.97
AAAAAAATGG 2 19.94
AAAAAACCCA 9 89.75
AAAAAACTGC 1 9.97

Total number of rows: 32412

Table truncated, full table size 581 Kbytes.




Supplementary data files not provided

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