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Sample GSM383900

Query DataSets for GSM383900

Status

Public on Mar 20, 2009

Title

SAGE_Kidney_Glomeruli_Normal_B_bjballer1

Sample type

SAGE

Anchor

NlaIII

Tag Count

48905

Tag Length

Source name

kidney, normal, male, adult, short extracted sage, bulk

Organism

Homo sapiens

Characteristics

organ/tissue: kidney
tissue preparation: bulk
age: 72
sex: male
other information: Glomeruli are from the unaffected pole of a kidney that was surgically removed for renal cell carcinoma. Glomeruli were isolated by sieving to >95% purity. Linker Sequences have been removed from the library.

Biomaterial provider

Wolfgang Fierlbeck, M.D. University of Frankfurt, Germany

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 2443
Tagging_enzyme: Mme I
Laboratory: B. Ballermann, M.D., Endothelial Cell Biology Lab, University of Alberta, Edmonton, Canada

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	1	20.45
AAAAAAAAAC	1	20.45
AAAAAAAAGA	1	20.45
AAAAAAAATG	2	40.90
AAAAAAAGTA	1	20.45
AAAAAAATGA	1	20.45
AAAAAAATGC	1	20.45
AAAAAACATT	1	20.45
AAAAAACCCA	2	40.90
AAAAAACTCC	4	81.79
AAAAAATAGA	1	20.45
AAAAAATGAA	4	81.79
AAAAAATTTG	2	40.90
AAAAACAAAG	1	20.45
AAAAACATCC	1	20.45
AAAAACCAAA	2	40.90
AAAAACCAAT	1	20.45
AAAAACCATA	6	122.69
AAAAACTAAC	1	20.45
AAAAAGAATT	1	20.45

Total number of rows: 20093

Table truncated, full table size 375 Kbytes.

Supplementary data files not provided