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Sample GSM383914 Query DataSets for GSM383914
Status Public on Mar 20, 2009
Title SAGE_Lung_tumor_associated_chronic_inflammation_B_UIHM0
Sample type SAGE
Anchor NlaIII
Tag Count 98962
Tag Length 10
 
Source name lung, tumor associated, bulk, female, short sage, adult
Organism Homo sapiens
Characteristics organ/tissue: lung
tissue preparation: bulk
age: 45 years
sex: female
cell type: focal fibrosis and chronic inflammation
mutations: N/A
Biomaterial provider K. Kernstine, Dept. Surgery (University of Iowa)
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 1366
Tagging_enzyme: BsmF I
Library_producer: S. Malchenko
Laboratory: B. Soares Laboratory (University of Iowa), contributed to the National Cancer Institute Genome Anatomy Project
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 25 252.62
AAAAAAAATT 1 10.10
AAAAAAACTC 1 10.10
AAAAAAAGGA 1 10.10
AAAAAAATCA 2 20.21
AAAAAAATTG 1 10.10
AAAAAACCCA 1 10.10
AAAAAACCCT 1 10.10
AAAAAACTCC 1 10.10
AAAAAAGAAG 1 10.10
AAAAAAGACT 1 10.10
AAAAAAGATA 1 10.10
AAAAAAGGTG 1 10.10
AAAAAATAAA 1 10.10
AAAAAATCGA 2 20.21
AAAAACAAAA 1 10.10
AAAAACACGG 1 10.10
AAAAACATCC 2 20.21
AAAAACATTC 14 141.47
AAAAACCAGA 1 10.10

Total number of rows: 32281

Table truncated, full table size 601 Kbytes.




Supplementary data files not provided

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